FAQs Archive - Agiomix

Comparative Microbial Genomics

Agiomix offers bioinformatics service for the analysis of sequencing data to monitor or assess bacterial variation over a period of time or from different geographical locations
We accept sequence data in the following formats:

Fastq
BAM

Customers can choose between 3 tiers of data analysis options

1ry – alignment to reference + variant detection
2ry – alignment to reference + variant detection + structural variation
3ry – alignment to reference + variant detection + structural variation + sample to sample comparisons

February 20th, 2018|

Viral Sequencing

Agiomix offers bioinformatics service for analysis of viral sequencing data for customers interested in studying spread of viral infections in a single patient or in a cohort of participants. This NGS based method can also be used to monitor epidemiology.
We accept sequence data in the following formats:

Fastq
BAM

Customers can choose between 3 tiers of data analysis options

1ry – viral genome assembly and annotation
2ry – virome de novo assembly and annotation
3ry – viral genotyping

February 20th, 2018|

Bacterial Whole Genome Sequencing

Agiomix provides data analysis of sequencing data from Bacterial whole genome sequencing to identify and characterize a pure bacterial isolate in a sample.

We accept sequence data in the following formats:

Fastq
BAM

Customers can choose between 3 tiers of data analysis options

1ry – de novo assembly + automated annotation
2ry – de novo assembly + annotation and mapping to reference
3ry – de novo assembly + annotation and mapping to reference + comparative analysis to related species

February 20th, 2018|

16S Metagenomics

Agiomix provides data analysis of 16S metagenomics sequencing data to identify and monitor the microbial diversity in a given sample

We accept sequence data in the following formats:

Fastq

Customers can choose between 3 tiers of data analysis options

1ry – alpha diversity (within each sample)
2ry – beta diversity (between samples)
3ry – interpretation of the 1ry and 2ry

February 20th, 2018|

Targeted Sequencing – Exomes

Agiomix offers bioinformatics service for the analysis of sequencing data to identify polymorphic variants in set of genes up to the entire exome.

We accept sequence data in the following formats:

Fastq
BAM

Customers can choose between 3 tiers of data analysis options

1ry – alignment to reference + variant detection
2ry – alignment to reference + variant detection + structural variation
3ry – alignment to reference + variant detection + structural variation + sample to sample comparisons

February 20th, 2018|

Targeted Sequencing – Panels

Agiomix provides bioinformatics service for the analysis of sequencing data to identify polymorphic variants in a small set of defined genes

We accept sequence data in the following formats:

Fastq
BAM

Customers can choose between 2 tiers of data analysis options

1ry – alignment to reference + variant detection
2ry – alignment to reference + variant detection + sample to sample comparisons

February 20th, 2018|

Bacterial Re-Sequencing

Agiomix offers bacterial re-sequencing service. This method can be used to monitor or study bacterial variation over a period of time or from different geographical locations.

February 20th, 2018|

Viral Sequencing

Agiomix offers viral sequencing service to customers interested in studying spread of viral infections in a single patient or in a cohort of participants. This NGS based method can also be used to monitor epidemiology.

February 20th, 2018|

Bacterial Whole Genome Sequencing

Agiomix provides bacterial whole genome sequencing (WGS) that involves de novo sequencing of the whole bacterial genome followed by genome assembly. This service is often used by researchers interested in investigating novel microbial genomes. Agiomix used SBS technology to provide our customers with high-quality draft and complete microbial genome assemblies.

February 20th, 2018|

16S Metagenomics

Agiomix offers 16S ribosomal RNA (rRNA) sequencing to identify and compare bacteria present within a given environmental or clinical sample. This NGS based method enables study of phylogeny and taxonomy of samples from complex microbiomes that may be difficult or impossible to study using conventional methods. 16S metagenomics enables analysis of the entire microbial community within a sample.

February 20th, 2018|

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