Bacterial whole-genome sequencing (WGS) is becoming accessible as a routine tool for clinical microbiology. It involves sequencing the entire genome of a bacteria and characterization of them. The detection of antimicrobial resistance genes is a challenging for many researchers, especially in public health and clinical labs. Agiomix offers bioinformatics service for the analysis of bacterial whole genome data to discover the genome, identifying phage, plasmid and function of the genes.
The discovery of SNPs and Indels are important in order to understand the population structure of bacteria, which is challenging for addressing important biological questions including bacterial evolution, transmission and epidemiology of bacterial pathogens and associated disease. Agiomix offers bioinformatics service for the analysis of bacterial whole genome data to discover the SNPs, Indels and phylogeny of the species.
Whole Genome Sequencing - Human (Re-sequencing)
Human whole genome sequencing, the act of deducing the complete DNA sequence of the human genome. It provides vital information on variant frequency in different populations and insight into understanding of diseases. Agiomix offers bioinformatics service for the analysis of human exome sequencing data to identify SNPs/Indels, structural variants and copy number variants.
Whole Genome Sequencing - Others (de novo)
de novo assembly of plants and animal genomes are remains challenging over the past decade. However, the genomes assembled from reads are generally draft genomes, especially in plants, some animals due to high repeat content and other biological content it’s difficult to assemble and provide chromosomal level assembly. Therefore, optimal genome assemblies through the high power computing and efficient algorithms are challenging task for genomics studies. Draft genome mostly contain piece of genes, collapsed or redundant repeats and chimeric contigs that confound gene functional assignment and structural variant detection. Agiomix offers bioinformatics service for whole genome sequencing data to characterizing the genomes through high resolution assembly, identifying genes and function of the genes.
Whole Genome Sequencing - Others (Re-sequencing)
Analyzing large genome become invaluable to the discovery of gene function and its involvement in the genome. The fast pace of innovation in NGS bioinformatics has enabled the analysis of huge volumes of sequence data at progressively lower cost. However, the advent of bioinformatics analysis combined with the growing accessibility of these NGS technology poses significant challenges for secondary and tertiary data analysis. Agiomix bioinformatics service provide analysis of large genome data to identify SNPs/Indels, structural variants, copy number variants and gene function in the large genomes.